U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Chaperone DnaJ-domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835020, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
Chaperone DnaJ-domain superfamily protein
Primary source
TAIR:AT5G49580
Locus tag
AT5G49580
See related
Araport:AT5G49580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K6M13.13; K6M13_13
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (20123563..20127509, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene peptide-N-glycanase 1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene plant/protein (Protein of unknown function, DUF538) Neighboring gene F-box family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001344850.1
NM_124336.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Chaperone DnaJ-domain superfamily protein
NP_001318769.1
  • Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT1G16680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20123563..20127509 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344851.1 → NP_001332620.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1R7T373

  2. NM_001344850.1 → NP_001318769.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U973, A0A384KV22, A0A5S9YCG3, Q9FGY8
    Conserved Domains (4) summary
    COG2966
    Location:124 → 281
    YjjP; Uncharacterized membrane protein YjjP, DUF1212 family [Function unknown]
    pfam00226
    Location:408 → 472
    DnaJ; DnaJ domain
    pfam04893
    Location:230 → 339
    Yip1; Yip1 domain
    pfam14901
    Location:519 → 616
    Jiv90; Cleavage inducing molecular chaperone

  3. NM_124336.2 → NP_199769.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199769.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U973, A0A384KV22, A0A5S9YCG3, Q9FGY8
    Conserved Domains (4) summary
    COG2966
    Location:124 → 281
    YjjP; Uncharacterized membrane protein YjjP, DUF1212 family [Function unknown]
    pfam00226
    Location:408 → 472
    DnaJ; DnaJ domain
    pfam04893
    Location:230 → 339
    Yip1; Yip1 domain
    pfam14901
    Location:519 → 616
    Jiv90; Cleavage inducing molecular chaperone
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.