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MYB78 myb domain protein 78 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835024, updated on 18-Sep-2024

Summary

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Official Symbol
MYB78
Official Full Name
myb domain protein 78
Primary source
TAIR:AT5G49620
Locus tag
AT5G49620
See related
Araport:AT5G49620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtMYB78; K6M13.18; K6M13_18; myb domain protein 78
Summary
Member of the R2R3 factor gene family.
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Genomic context

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See MYB78 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (20137214..20139609, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene plant/protein (Protein of unknown function, DUF538) Neighboring gene F-box family protein Neighboring gene ncRNA Neighboring gene amino acid permease 6 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. Yanhui C, et al. Plant Mol Biol, 2006 Jan. PMID 16463103
  2. Transcriptome analysis reveals specific modulation of abscisic acid signaling by ROP10 small GTPase in Arabidopsis. Xin Z, et al. Plant Physiol, 2005 Nov. PMID 16258012, Free PMC Article
  3. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article
  4. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
  5. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001203573.1
NM_124340.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to abscisic acid IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in response to salt IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
myb domain protein 78
NP_001190502.1
  • myb domain protein 78 (MYB78); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 108 (TAIR:AT3G06490.1).
NP_199773.1
  • myb domain protein 78 (MYB78); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 108 (TAIR:AT3G06490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20137214..20139609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124340.3 → NP_199773.1  myb domain protein 78 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199773.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K666, Q9FGY3, Q9ZTC6
    UniProtKB/TrEMBL
    A0A7G2FEW2
    Conserved Domains (1) summary
    PLN03212
    Location:23 → 143
    PLN03212; Transcription repressor MYB5; Provisional

  2. NM_001203573.1 → NP_001190502.1  myb domain protein 78 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190502.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9YD69, A0A654G9I1
    Conserved Domains (1) summary
    PLN03212
    Location:23 → 157
    PLN03212; Transcription repressor MYB5; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FGY3.1

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