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SABRE-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835031, updated on 18-Sep-2024

Summary

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Official Full Name
SABRE-like protein
Primary source
TAIR:AT5G49680
Locus tag
AT5G49680
See related
Araport:AT5G49680
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Summary
Conserved among eukaryotes, similar to Arabidopsis SABRE. The phenotype of the kip/sab double mutant suggests related functions for both genes, however, the KIP protein is mostly required for tip-growth. Predicted to be targeted to the secretory pathway. mRNA was detected in all organs, with most abundance in pollen and roots.
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Genomic context

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Location:
chromosome: 5
Exon count:
23
Sequence:
Chromosome: 5; NC_003076.8 (20176080..20188567)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat transmembrane protein kinase family protein Neighboring gene Zinc finger (C3HC4-type RING finger) family protein Neighboring gene ncRNA Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene miscRNA Neighboring gene Putative AT-hook DNA-binding family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. KINKY POLLEN encodes a SABRE-like protein required for tip growth in Arabidopsis and conserved among eukaryotes. Procissi A, et al. Plant J, 2003 Dec. PMID 14675453
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Markers

NM_001085269.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in pollen tube growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in root hair cell tip growth IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in pollen tube tip IDA
Inferred from Direct Assay
more info
 PubMed 
located_in root hair tip IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SABRE-like protein
NP_001078738.1
  • Golgi-body localisation protein domain; RNA pol II promoter Fmp27 protein domain; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FMP27, domain-6, C-terminal (InterPro:IPR019443), Protein of unknown function FMP27, domain-4 (InterPro:IPR019441); BEST Arabidopsis thaliana protein match is: Golgi-body localisation protein domain; RNA pol II promoter Fmp27 protein domain (TAIR:AT1G58250.1); Has 241 Blast hits to 185 proteins in 77 species: Archae - 0; Bacteria - 2; Metazoa - 115; Fungi - 36; Plants - 79; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20176080..20188567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001085269.2 → NP_001078738.1  SABRE-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078738.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6IMT0, Q9LTA4, Q9LTA5
    UniProtKB/TrEMBL
    A0A178UE23, A0A5S9YET5, A0A654G9I7
    Conserved Domains (2) summary
    pfam10347
    Location:1206 → 1301
    Fmp27_GFWDK; RNA pol II promoter Fmp27 protein domain
    pfam10351
    Location:1917 → 2426
    Apt1; Golgi-body localization protein domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6IMT0.1

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