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DNA repair protein RadA-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835101, updated on 18-Sep-2024

Summary

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Official Full Name
DNA repair protein RadA-like protein
Primary source
TAIR:AT5G50340
Locus tag
AT5G50340
See related
Araport:AT5G50340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MXI22.5; MXI22_5
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Genomic context

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Location:
chromosome: 5
Exon count:
17
Sequence:
Chromosome: 5; NC_003076.8 (20491393..20496589, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein Neighboring gene maternally expressed family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001344887.1
NM_001344888.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
  
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
DNA repair protein RadA-like protein
NP_001318773.1
  • ATP-dependent peptidases;nucleotide binding;serine-type endopeptidases;DNA helicases;ATP binding;damaged DNA binding;nucleoside-triphosphatases; FUNCTIONS IN: in 7 functions; INVOLVED IN: DNA repair, proteolysis, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), DNA repair protein RadA (InterPro:IPR004504), DNA helicase, DnaB-like, C-terminal (InterPro:IPR007694), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); Has 8098 Blast hits to 8084 proteins in 2420 species: Archae - 172; Bacteria - 6133; Metazoa - 8; Fungi - 0; Plants - 82; Viruses - 9; Other Eukaryotes - 1694 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20491393..20496589 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124415.5 → NP_199845.3  DNA repair protein RadA-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199845.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654G9M8, Q0WVW9
    Conserved Domains (3) summary
    PRK11823
    Location:104 → 587
    PRK11823; DNA repair protein RadA; Provisional
    cd01121
    Location:109 → 508
    Sms; Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of ...
    cl21678
    Location:498 → 555
    ChlI; Subunit ChlI of Mg-chelatase

  2. NM_001344887.1 → NP_001318773.1  DNA repair protein RadA-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UC10, F4K8X8

  3. NM_001344888.1 → NP_001332610.1  DNA repair protein RadA-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UC10, F4K8X8
Nucleotide Protein
Heading Accession and Version

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