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HCP-like superfamily protein with MYND-type zinc finger [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835113, updated on 18-Sep-2024

Summary

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Official Full Name
HCP-like superfamily protein with MYND-type zinc finger
Primary source
TAIR:AT5G50450
Locus tag
AT5G50450
See related
Araport:AT5G50450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MXI22.17; MXI22_17
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (20543225..20544857, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene membrin 12 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene secE/sec61-gamma protein transport protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_124427.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
HCP-like superfamily protein with MYND-type zinc finger
NP_199856.1
  • HCP-like superfamily protein with MYND-type zinc finger; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein with MYND-type zinc finger (TAIR:AT1G67340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20543225..20544857 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124427.4 → NP_199856.1  HCP-like superfamily protein with MYND-type zinc finger [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_199856.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FK27
    UniProtKB/TrEMBL
    A0A5S9YCU9
    Conserved Domains (4) summary
    COG0790
    Location:95 → 204
    TPR; TPR repeat [Signal transduction mechanisms]
    sd00010
    Location:115 → 144
    SLR; SLR repeat [structural motif]
    pfam01753
    Location:261 → 305
    zf-MYND; MYND finger
    pfam08238
    Location:171 → 201
    Sel1; Sel1 repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FK27.1

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