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SPL13B Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835138, updated on 18-Sep-2024

Summary

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Official Symbol
SPL13B
Official Full Name
Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
Primary source
TAIR:AT5G50670
Locus tag
AT5G50670
See related
Araport:AT5G50670
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MFB16.6; SPL13; SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13; SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B
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Genomic context

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See SPL13B in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (20615565..20618063, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene transmembrane protein, putative (DUF 3339) Neighboring gene uncharacterized protein Neighboring gene SUMO activating enzyme 1B Neighboring gene hydroxysteroid dehydrogenase 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Verticillium dahliae Secretes Small RNA to Target Host MIR157d and Retard Plant Floral Transition During Infection. Zhang BS, et al. Front Plant Sci, 2022. PMID 35519822, Free PMC Article
  2. miR156-targeted and nontargeted SBP-box transcription factors act in concert to secure male fertility in Arabidopsis. Xing S, et al. Plant Cell, 2010 Dec. PMID 21177480, Free PMC Article
  3. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
  4. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
  5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_124445.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within anther development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to fungus IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in vegetative to reproductive phase transition of meristem IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
NP_568740.1
  • Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (TAIR:AT5G50570.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    20615565..20618063 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344905.1 → NP_001332253.1  Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DI20, P0DI11, Q8LFW6, Q9LUF4
    UniProtKB/TrEMBL
    A0A178UFC6, A0A5S9YF45
    Conserved Domains (1) summary
    pfam03110
    Location:101 → 175
    SBP; SBP domain

  2. NM_124445.4 → NP_568740.1  Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568740.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B9DI20, P0DI11, Q8LFW6, Q9LUF4
    UniProtKB/TrEMBL
    A0A178UFC6, A0A5S9YF45
    Conserved Domains (1) summary
    pfam03110
    Location:101 → 175
    SBP; SBP domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B9DI20.1
P0DI11.1

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