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TCP family transcription factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835266, updated on 18-Sep-2024

Summary

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Official Full Name
TCP family transcription factor
Primary source
TAIR:AT5G51910
Locus tag
AT5G51910
See related
Araport:AT5G51910
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MJM18.6; MJM18_6; TCP domain protein 19; TCP19
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (21094547..21095891, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene Peroxidase superfamily protein Neighboring gene Cytochrome P450 family protein Neighboring gene uncharacterized protein Neighboring gene Pyridoxal phosphate (PLP)-dependent transferases superfamily protein Neighboring gene Glucose-methanol-choline (GMC) oxidoreductase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Specific TCP transcription factors interact with and stabilize PRR2 within different nuclear sub-domains. Perez M, et al. Plant Sci, 2019 Oct. PMID 31481190
  2. TCP transcription factors are critical for the coordinated regulation of isochorismate synthase 1 expression in Arabidopsis thaliana. Wang X, et al. Plant J, 2015 Apr. PMID 25702611
  3. Independently evolved virulence effectors converge onto hubs in a plant immune system network. Mukhtar MS, et al. Science, 2011 Jul 29. PMID 21798943, Free PMC Article
  4. Analysis of functional redundancies within the Arabidopsis TCP transcription factor family. Danisman S, et al. J Exp Bot, 2013 Dec. PMID 24129704, Free PMC Article
  5. Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners. Marín-de la Rosa N, et al. Plant Physiol, 2014 Oct. PMID 25118255, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The interaction between PRR2 and TCP19 or TCP20 would contribute to the biological function in specific nuclear compartments.
    Title: Specific TCP transcription factors interact with and stabilize PRR2 within different nuclear sub-domains.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_124570.4
NM_180842.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within regulation of defense response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TCP family transcription factor
NP_200004.1
  • TCP family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT2G45680.1); Has 731 Blast hits to 731 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 731; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_851173.1
  • TCP family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP family transcription factor (TAIR:AT2G45680.1); Has 731 Blast hits to 731 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 731; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21094547..21095891 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180842.1 → NP_851173.1  TCP family transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851173.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LCV9, Q9LT89
    UniProtKB/TrEMBL
    A0A178UCD4, A0A654GA39
    Conserved Domains (1) summary
    cl23822
    Location:55 → 125
    TCP; TCP family transcription factor

  2. NM_124570.4 → NP_200004.1  TCP family transcription factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200004.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LCV9, Q9LT89
    UniProtKB/TrEMBL
    A0A178UCD4, A0A654GA39
    Conserved Domains (1) summary
    cl23822
    Location:55 → 125
    TCP; TCP family transcription factor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LT89.1

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