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chromosome transmission fidelity-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835298, updated on 18-Sep-2024

Summary

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Official Full Name
chromosome transmission fidelity-like protein
Primary source
TAIR:AT5G52220
Locus tag
AT5G52220
See related
Araport:AT5G52220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F17P19.12; F17P19_12
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (21207097..21207716, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene homeodomain GLABROUS 7 Neighboring gene phosphoprotein phosphatase inhibitor Neighboring gene ncRNA Neighboring gene GTP-binding protein 1 Neighboring gene methyl-CPG-binding domain protein 13 Neighboring gene membrane steroid binding protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001203590.1
NM_124601.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitotic sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Ctf18 RFC-like complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
chromosome transmission fidelity-like protein
NP_001190519.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607).
NP_200035.4
  • CONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607); Has 127 Blast hits to 127 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 17; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21207097..21207716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203590.1 → NP_001190519.1  chromosome transmission fidelity-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190519.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UJQ2, A0A654GAF0, F4KEU5, Q9LTJ9
    Conserved Domains (1) summary
    pfam09696
    Location:15 → 111
    Ctf8

  2. NM_124601.5 → NP_200035.4  chromosome transmission fidelity-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200035.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GAF0, F4KEU4, Q9LTJ9
    Conserved Domains (1) summary
    pfam09696
    Location:15 → 111
    Ctf8; Ctf8
Nucleotide Protein
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