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oxidoreductase/transition metal ion-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835317, updated on 18-Sep-2024

Summary

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Official Full Name
oxidoreductase/transition metal ion-binding protein
Primary source
TAIR:AT5G52410
Locus tag
AT5G52410
See related
Araport:AT5G52410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K24M7.15; K24M7_15
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Sequence:
Chromosome: 5; NC_003076.8 (21275889..21279522)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene PAR1 protein Neighboring gene cytochrome P450, family 715, subfamily A, polypeptide 1 Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene hydroxyproline-rich glycoprotein family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
  2. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_124620.3
NM_203198.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast envelope HDA PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
oxidoreductase/transition metal ion-binding protein
NP_200054.2
  • CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974927.1
  • INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21275889..21279522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344996.1 → NP_001332691.1  oxidoreductase/transition metal ion-binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1R7T3E3, A0A654GAG1

  2. NM_124620.3 → NP_200054.2  oxidoreductase/transition metal ion-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200054.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KG65, Q8RY92
    Conserved Domains (1) summary
    pfam07798
    Location:246 → 341
    DUF1640; Protein of unknown function (DUF1640)

  3. NM_203198.1 → NP_974927.1  oxidoreductase/transition metal ion-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974927.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GAG1, F4KG64
    Conserved Domains (1) summary
    pfam07798
    Location:497 → 592
    DUF1640; Protein of unknown function (DUF1640)
Nucleotide Protein
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