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Ubiquitin-associated/translation elongation factor EF1B protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835414, updated on 18-Sep-2024

Summary

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Official Full Name
Ubiquitin-associated/translation elongation factor EF1B protein
Primary source
TAIR:AT5G53330
Locus tag
AT5G53330
See related
Araport:AT5G53330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K19E1.13; K19E1_13
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (21639216..21640963)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme 10 Neighboring gene myosin heavy chain-like protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene Galactosyltransferase family protein Neighboring gene ncRNA Neighboring gene CLP protease regulatory subunit X

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
  2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_124712.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ESCRT I complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
Ubiquitin-associated/translation elongation factor EF1B protein
NP_568790.1
  • Ubiquitin-associated/translation elongation factor EF1B protein; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21639216..21640963
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124712.3 → NP_568790.1  Ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568790.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UJY0, Q8LG11, Q93VW9
    Conserved Domains (1) summary
    cl21463
    Location:181 → 217
    UBA_like_SF; UBA domain-like superfamily
Nucleotide Protein
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