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VQ motif-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835464, updated on 18-Sep-2024

Summary

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Official Full Name
VQ motif-containing protein
Primary source
TAIR:AT5G53830
Locus tag
AT5G53830
See related
Araport:AT5G53830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MGN6.22; MGN6_22; MPK3/6-targeted VQP 3; MVQ3
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (21856948..21858102)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene O-methyltransferase family protein Neighboring gene pseudo Neighboring gene Late embryogenesis abundant protein (LEA) family protein Neighboring gene F-box/RNI-like/FBD-like domains-containing protein Neighboring gene haloacid dehalogenase-like hydrolase family protein Neighboring gene embryo defective 2737

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structural and functional analysis of VQ motif-containing proteins in Arabidopsis as interacting proteins of WRKY transcription factors. Cheng Y, et al. Plant Physiol, 2012 Jun. PMID 22535423, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_124762.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
VQ motif-containing protein
NP_200194.1
  • VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT3G15300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21856948..21858102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124762.3 → NP_200194.1  VQ motif-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200194.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FHZ3
    UniProtKB/TrEMBL
    A0A178U9R4, A0A5S9YDR7, A0A654GAN3
    Conserved Domains (1) summary
    pfam05678
    Location:46 → 66
    VQ; VQ motif
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FHZ3.1

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