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membrane lipoprotein lipid attachment site-like protein, putative (DUF1223) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835512, updated on 18-Sep-2024

Summary

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Official Full Name
membrane lipoprotein lipid attachment site-like protein, putative (DUF1223)
Primary source
TAIR:AT5G54240
Locus tag
AT5G54240
See related
Araport:AT5G54240
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MDK4.6; MDK4_6
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (22022978..22024658, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene low-molecular-weight cysteine-rich 83 Neighboring gene myb domain protein 49 Neighboring gene cyclic nucleotide-gated cation channel 4 Neighboring gene DNA repair and meiosis protein (Mre11)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_124804.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
membrane lipoprotein lipid attachment site-like protein, putative (DUF1223)
NP_200235.1
  • Protein of unknown function (DUF1223); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1223 (InterPro:IPR010634); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1223) (TAIR:AT4G27350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22022978..22024658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124804.3 → NP_200235.1  membrane lipoprotein lipid attachment site-like protein, putative (DUF1223) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UST5, Q9FL72
    Conserved Domains (1) summary
    pfam06764
    Location:44 → 264
    DUF1223; Protein of unknown function (DUF1223)
Nucleotide Protein
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