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cotton fiber-like protein (DUF761) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835518, updated on 18-Sep-2024

Summary

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Official Full Name
cotton fiber-like protein (DUF761)
Primary source
TAIR:AT5G54300
Locus tag
AT5G54300
See related
Araport:AT5G54300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MDK4.12; MDK4_12
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (22053969..22055443, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DNA repair and meiosis protein (Mre11) Neighboring gene light-harvesting chlorophyll B-binding protein 3 Neighboring gene myosin 2 Neighboring gene cytochrome c biogenesis protein family Neighboring gene ncRNA Neighboring gene ARF-GAP domain 5 Neighboring gene hypothetical protein (DUF295)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis. Lumba S, et al. Dev Cell, 2014 May 12. PMID 24823379
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_124810.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
cotton fiber-like protein (DUF761)
NP_200241.1
  • Protein of unknown function (DUF761); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF761, plant (InterPro:IPR008480); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF761) (TAIR:AT1G61260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22053969..22055443 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_124810.4 → NP_200241.1  cotton fiber-like protein (DUF761) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200241.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UDW3, A0A5S9YEG4, Q9FL70
    Conserved Domains (2) summary
    pfam05553
    Location:287 → 321
    DUF761; Cotton fibre expressed protein
    pfam14364
    Location:44 → 76
    DUF4408; Domain of unknown function (DUF4408)
Nucleotide Protein
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