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NOI RPM1-interacting protein 4 (RIN4) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835679, updated on 18-Sep-2024

Summary

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Official Symbol
NOI
Official Full Name
RPM1-interacting protein 4 (RIN4) family protein
Primary source
TAIR:AT5G55850
Locus tag
AT5G55850
See related
Araport:AT5G55850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MWJ3.3; MWJ3_3; NOI PROTEIN
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Genomic context

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See NOI in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (22603302..22605300)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene PPR superfamily protein Neighboring gene Ubiquitin-like superfamily protein Neighboring gene Ubiquitin-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis thaliana genes expressed in the early compatible interaction with root-knot nematodes. Vercauteren I, et al. Mol Plant Microbe Interact, 2001 Mar. PMID 11277426
  2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

NM_001161310.1
NM_001345164.1
NM_124967.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in response to nematode IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
RPM1-interacting protein 4 (RIN4) family protein
NP_001154782.1
  • NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT2G04410.1); Has 285 Blast hits to 284 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 283; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
NP_001318805.1
  • NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT2G04410.1).
NP_200396.2
  • NOI; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to nitrate; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT2G04410.1); Has 284 Blast hits to 283 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 282; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    22603302..22605300
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345164.1 → NP_001318805.1  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K693, F4K694, O22633, Q9M3R9
    UniProtKB/TrEMBL
    A0A178UE20, A0A5S9YEW9, A0A654GBI5
    Conserved Domains (1) summary
    pfam05627
    Location:3 → 38
    AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr

  2. NM_001161310.1 → NP_001154782.1  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154782.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K692
    Conserved Domains (1) summary
    pfam05627
    Location:19 → 54
    AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr

  3. NM_124967.3 → NP_200396.2  RPM1-interacting protein 4 (RIN4) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200396.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K693
    Conserved Domains (1) summary
    pfam05627
    Location:3 → 38
    AvrRpt-cleavage; Cleavage site for pathogenic type III effector avirulence factor Avr
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O22633.1

Gene LinkOut

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