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BGAL4 beta-galactosidase 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835789, updated on 18-Sep-2024

Summary

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Official Symbol
BGAL4
Official Full Name
beta-galactosidase 4
Primary source
TAIR:AT5G56870
Locus tag
AT5G56870
See related
Araport:AT5G56870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
beta-galactosidase 4; MPI10.3; MPI10_3
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Genomic context

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See BGAL4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
17
Sequence:
Chromosome: 5; NC_003076.8 (23003909..23009672)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Protein kinase superfamily protein Neighboring gene CwfJ-like family protein / zinc finger (CCCH-type) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Subcellular location of Arabidopsis thaliana subfamily a1 β-galactosidases and developmental regulation of transcript levels of their coding genes. Moneo-Sánchez M, et al. Plant Physiol Biochem, 2016 Dec. PMID 27676245
  2. Expression of beta-galactosidase and beta-xylosidase genes during microspore and pollen development. Hrubá P, et al. Planta, 2005 Apr. PMID 15517348
  3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_125070.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables beta-galactosidase activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
beta-galactosidase 4
NP_200498.1
  • beta-galactosidase 4 (BGAL4); FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta-galactosidase 12 (TAIR:AT4G26140.1); Has 2215 Blast hits to 2058 proteins in 473 species: Archae - 15; Bacteria - 949; Metazoa - 388; Fungi - 211; Plants - 584; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23003909..23009672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125070.3 → NP_200498.1  beta-galactosidase 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200498.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56WL4, Q93Y27, Q9SCV8
    UniProtKB/TrEMBL
    A0A178UNM5, A0A5S9YF80, A0A654GBW8
    Conserved Domains (1) summary
    PLN03059
    Location:5 → 724
    PLN03059; beta-galactosidase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SCV8.1

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