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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835888, updated on 18-Sep-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
TAIR:AT5G57790
Locus tag
AT5G57790
See related
Araport:AT5G57790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MTI20.2; MTI20_2
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (23411887..23414811, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene Fatty acid hydroxylase superfamily Neighboring gene tetraspanin15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ABORTED GAMETOPHYTE 1 is required for gametogenesis in Arabidopsis. Cui HH, et al. J Integr Plant Biol, 2015 Dec. PMID 25693728
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001037013.3
NM_001345274.1
NM_125163.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within megagametogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within microsporogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
NP_001032090.1
  • unknown protein; Has 13 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_200587.3
  • unknown protein; Has 13 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23411887..23414811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345275.1 → NP_001330394.1  uncharacterized protein AT5G57790 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BAP2, A0A654GC33, A0A7G2FH04

  2. NM_001037013.3 → NP_001032090.1  uncharacterized protein AT5G57790 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001032090.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FH04, Q6ID95

  3. NM_125163.5 → NP_200587.3  uncharacterized protein AT5G57790 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200587.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UF18, F4KC44, Q9FJN5

  4. NM_001345274.1 → NP_001330393.1  uncharacterized protein AT5G57790 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BAP7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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