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26S proteasome regulatory subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835906, updated on 18-Sep-2024

Summary

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Official Full Name
26S proteasome regulatory subunit
Primary source
TAIR:AT5G57950
Locus tag
AT5G57950
See related
Araport:AT5G57950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MTI20.21; MTI20_21
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (23460673..23462388)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene APO RNA-binding protein (DUF794) Neighboring gene cyclic nucleotide gated channel 5 Neighboring gene GTP-binding protein, HflX Neighboring gene DNA glycosylase superfamily protein Neighboring gene RNA polymerase II fifth largest subunit, C

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_125180.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome regulatory particle assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in intracellular anatomical structure ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
26S proteasome regulatory subunit
NP_568872.1
  • 26S proteasome regulatory subunit, putative; CONTAINS InterPro DOMAIN/s: PDZ/DHR/GLGF (InterPro:IPR001478); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23460673..23462388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345281.1 → NP_001330274.1  26S proteasome regulatory subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BA81, Q9FJM1

  2. NM_125180.3 → NP_568872.1  26S proteasome regulatory subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568872.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U8W0, A0A7G2FKY9, Q8LAJ4
    Conserved Domains (2) summary
    COG0265
    Location:144 → 211
    DegQ; Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
    cl00117
    Location:144 → 209
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
Nucleotide Protein
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