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RPB5C RNA polymerase II fifth largest subunit, C [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835909, updated on 18-Sep-2024

Summary

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Official Symbol
RPB5C
Official Full Name
RNA polymerase II fifth largest subunit, C
Primary source
TAIR:AT5G57980
Locus tag
AT5G57980
See related
Araport:AT5G57980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
''RNA polymerase II fifth largest subunit; C; C''; MTI20.24; MTI20_24; RNA polymerase II fifth largest subunit
Summary
NRPB5-like protein of unknown function; homologous to budding yeast RPB5
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Genomic context

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See RPB5C in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (23468959..23469856, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit Neighboring gene GTP-binding protein, HflX Neighboring gene DNA glycosylase superfamily protein Neighboring gene ubiquitin-specific protease 23 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-directed 5'-3' RNA polymerase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA polymerase II fifth largest subunit, C
NP_200606.1
  • ''RNA polymerase II fifth largest subunit, C'' (RPB5C); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: shoot apex, leaf whorl, sepal, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381); BEST Arabidopsis thaliana protein match is: Eukaryotic rpb5 RNA polymerase subunit family protein (TAIR:AT3G22320.1); Has 862 Blast hits to 862 proteins in 307 species: Archae - 143; Bacteria - 0; Metazoa - 161; Fungi - 219; Plants - 117; Viruses - 8; Other Eukaryotes - 214 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23468959..23469856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125183.2 → NP_200606.1  RNA polymerase II fifth largest subunit, C [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200606.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FJL8
    UniProtKB/TrEMBL
    A0A178UMU7, A0A5S9YFI5, A0A654GC91
    Conserved Domains (1) summary
    PLN03111
    Location:1 → 210
    PLN03111; DNA-directed RNA polymerase II subunit family protein; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FJL8.1

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