U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RTF2 RING-finger protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835914, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
RTF2 RING-finger protein
Primary source
TAIR:AT5G58020
Locus tag
AT5G58020
See related
Araport:AT5G58020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F2C19.3; F2C19_3
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (23485496..23486818)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Cytochrome c oxidase, subunit Vib family protein Neighboring gene LJRHL1-like 3 Neighboring gene Transport protein particle (TRAPP) component Neighboring gene FIP1[V]-like protein Neighboring gene SHV3-like 4 Neighboring gene SNARE-like superfamily protein Neighboring gene temperature-induced lipocalin

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. An Rtf2 Domain-Containing Protein Influences Pre-mRNA Splicing and Is Essential for Embryonic Development in Arabidopsis thaliana. Sasaki T, et al. Genetics, 2015 Jun. PMID 25819795, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

NM_125187.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within alternative mRNA splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in mitotic DNA replication termination IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
RTF2 RING-finger protein
NP_200610.1
  • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23485496..23486818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125187.4 → NP_200610.1  RTF2 RING-finger protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200610.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UAJ7, A0A654GCH3, Q6NQ98
    Conserved Domains (1) summary
    pfam04641
    Location:94 → 337
    Rtf2; Rtf2 RING-finger
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools