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hydroxyproline-rich glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835933, updated on 18-Sep-2024

Summary

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Official Full Name
hydroxyproline-rich glycoprotein family protein
Primary source
TAIR:AT5G58210
Locus tag
AT5G58210
See related
Araport:AT5G58210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MCK7.8; MCK7_8
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (23552094..23554402)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Synaptobrevin family protein Neighboring gene evolutionarily conserved C-terminal region 10 Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene transthyretin-like protein Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene FRAGILE HISTIDINE TRIAD Neighboring gene YCF54 Neighboring gene oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001085296.1
NM_125206.5
NM_203226.1
NM_203227.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hydroxyproline-rich glycoprotein family protein
NP_001078765.1
  • hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G52170.2); Has 3904 Blast hits to 1821 proteins in 363 species: Archae - 22; Bacteria - 592; Metazoa - 772; Fungi - 625; Plants - 211; Viruses - 44; Other Eukaryotes - 1638 (source: NCBI BLink).
NP_200629.2
  • hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G52170.2); Has 3902 Blast hits to 1819 proteins in 361 species: Archae - 22; Bacteria - 590; Metazoa - 772; Fungi - 625; Plants - 211; Viruses - 44; Other Eukaryotes - 1638 (source: NCBI BLink).
NP_974955.1
  • hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G52170.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974956.1
  • hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT3G52170.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23552094..23554402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001085296.1 → NP_001078765.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078765.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UK22, A0A5S9YF46, Q8GWS7
    Conserved Domains (1) summary
    pfam05109
    Location:116 → 273
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  2. NM_125206.5 → NP_200629.2  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200629.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UK22, A0A5S9YF46, Q8GWS7
    Conserved Domains (1) summary
    pfam05109
    Location:116 → 273
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  3. NM_203227.2 → NP_974956.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974956.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UK22, A0A5S9YF46, Q8GWS7
    Conserved Domains (1) summary
    pfam05109
    Location:116 → 273
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

  4. NM_203226.1 → NP_974955.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974955.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UK22, A0A5S9YF46, Q8GWS7
    Conserved Domains (1) summary
    pfam05109
    Location:116 → 273
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
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