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RANBP1 RAN binding protein 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835973, updated on 18-Sep-2024

Summary

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Official Symbol
RANBP1
Official Full Name
RAN binding protein 1
Primary source
TAIR:AT5G58590
Locus tag
AT5G58590
See related
Araport:AT5G58590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MZN1.4; MZN1_4; RAN binding protein 1
Summary
Encodes a Ran-binding protein 1 homolog (RanBP1).
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Genomic context

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See RANBP1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (23680063..23681935, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene TOXICOS EN LEVADURA 63 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of proteins that interact with the GTP-bound form of the regulatory GTPase Ran in Arabidopsis. Haizel T, et al. Plant J, 1997 Jan. PMID 9025305
  2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_125246.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within protein import into nucleus TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
RAN binding protein 1
NP_200667.2
  • RAN binding protein 1 (RANBP1); FUNCTIONS IN: protein binding; INVOLVED IN: protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) domain superfamily protein (TAIR:AT2G30060.1); Has 1560 Blast hits to 1231 proteins in 240 species: Archae - 0; Bacteria - 8; Metazoa - 836; Fungi - 365; Plants - 158; Viruses - 15; Other Eukaryotes - 178 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23680063..23681935 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125246.4 → NP_200667.2  RAN binding protein 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200667.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P92985, Q9LUZ8
    UniProtKB/TrEMBL
    A0A178UPR8, A0A384LJ84, Q1WWI2
    Conserved Domains (1) summary
    cd13179
    Location:24 → 157
    RanBD_RanBP1; Ran-binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P92985.1

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