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Selenoprotein, Rdx type [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835978, updated on 18-Sep-2024

Summary

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Official Full Name
Selenoprotein, Rdx type
Primary source
TAIR:AT5G58640
Locus tag
AT5G58640
See related
Araport:AT5G58640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MZN1.9; MZN1_9
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (23697841..23699767)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene zinc finger (CCCH-type) family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene plant peptide containing sulfated tyrosine 1 Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene phospholipase C1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  2. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812
  3. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001037019.1
NM_125251.3

Gene Ontology Provided by TAIR

Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum HDA PubMed 
located_in plasma membrane HDA PubMed 

General protein information

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Preferred Names
Selenoprotein, Rdx type
NP_001032096.1
  • Selenoprotein, Rdx type; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Selenoprotein T (InterPro:IPR019389), Selenoprotein, Rdx type (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: SELT-like protein precursor (TAIR:AT3G47300.1); Has 232 Blast hits to 232 proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
NP_200672.1
  • Selenoprotein, Rdx type; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Selenoprotein T (InterPro:IPR019389), Selenoprotein, Rdx type (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: SELT-like protein precursor (TAIR:AT3G47300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23697841..23699767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125251.3 → NP_200672.1  Selenoprotein, Rdx type [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200672.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9L2, A0A5S9YF96, A0A654GC67, A0A7G2FHA4, Q8W1E5
    Conserved Domains (1) summary
    cl01407
    Location:76 → 215
    Rdx; Rdx family

  2. NM_001037019.1 → NP_001032096.1  Selenoprotein, Rdx type [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001032096.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U9L2, A0A5S9YF96, A0A654GC67, F4KGA7
    Conserved Domains (1) summary
    cl01407
    Location:75 → 214
    Rdx; Rdx family
Nucleotide Protein
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