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ftsh9 FTSH protease 9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836004, updated on 18-Sep-2024

Summary

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Official Symbol
ftsh9
Official Full Name
FTSH protease 9
Primary source
TAIR:AT5G58870
Locus tag
AT5G58870
See related
Araport:AT5G58870
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
FTSH protease 9; K19M22.17; K19M22_17
Summary
encodes an FtsH protease that is localized to the chloroplast
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Genomic context

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See ftsh9 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Sequence:
Chromosome: 5; NC_003076.8 (23769786..23773973, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene myb domain protein 119 Neighboring gene cytochrome P450, family 86, subfamily A, polypeptide 1 Neighboring gene LRR protein Neighboring gene AGAMOUS-like 82

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature. Adam Z, et al. Plant Physiol, 2001 Apr. PMID 11299370, Free PMC Article
  2. Coordinated regulation and complex formation of yellow variegated1 and yellow variegated2, chloroplastic FtsH metalloproteases involved in the repair cycle of photosystem II in Arabidopsis thylakoid membranes. Sakamoto W, et al. Plant Cell, 2003 Dec. PMID 14630971, Free PMC Article
  3. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article
  4. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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NM_125277.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent peptidase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
FTSH protease 9
NP_568892.1
  • FTSH protease 9 (ftsh9); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 7 (TAIR:AT3G47060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    23769786..23773973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125277.4 → NP_568892.1  FTSH protease 9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568892.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FIM2
    UniProtKB/TrEMBL
    A0A178UAY0, A0A5S9YFG6
    Conserved Domains (1) summary
    TIGR01241
    Location:322 → 759
    FtsH_fam; ATP-dependent metalloprotease FtsH
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FIM2.1

Gene LinkOut

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