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Heavy metal transport/detoxification superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836201, updated on 18-Sep-2024

Summary

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Official Full Name
Heavy metal transport/detoxification superfamily protein
Primary source
TAIR:AT5G60800
Locus tag
AT5G60800
See related
Araport:AT5G60800
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MAE1.5; MAE1_5
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (24460719..24462595, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene nitrate transporter 2.3 Neighboring gene ABC transporter family protein Neighboring gene miscRNA Neighboring gene Putative membrane lipoprotein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The zinc-binding nuclear protein HIPP3 acts as an upstream regulator of the salicylate-dependent plant immunity pathway and of flowering time in Arabidopsis thaliana. Zschiesche W, et al. New Phytol, 2015 Sep. PMID 25913773
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. HIPP3 acts via its bound zinc as an upstream regulator of the salicylate-dependent pathway of pathogen response and is also involved in abiotic stress responses and seed and flower development.[HIPP3]
    Title: The zinc-binding nuclear protein HIPP3 acts as an upstream regulator of the salicylate-dependent plant immunity pathway and of flowering time in Arabidopsis thaliana.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001203653.1
NM_125473.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of flower development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Heavy metal transport/detoxification superfamily protein
NP_001190582.1
  • Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G36950.1).
NP_200888.2
  • Heavy metal transport/detoxification superfamily protein; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT2G36950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24460719..24462595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125473.4 → NP_200888.2  Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200888.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FJH5
    UniProtKB/TrEMBL
    A0A178UCP2, A0A5S9YI72, A0A654GDB3
    Conserved Domains (1) summary
    pfam00403
    Location:28 → 77
    HMA; Heavy-metal-associated domain

  2. NM_001203653.1 → NP_001190582.1  Heavy metal transport/detoxification superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190582.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GDB3, F4K0H3
    Conserved Domains (1) summary
    pfam00403
    Location:28 → 77
    HMA; Heavy-metal-associated domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FJH5.1

Gene LinkOut

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