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zinc ion-binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836233, updated on 18-Sep-2024

Summary

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Official Full Name
zinc ion-binding protein
Primary source
TAIR:AT5G61120
Locus tag
AT5G61120
See related
Araport:AT5G61120
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MAF19.12; MAF19_12
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Genomic context

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Location:
chromosome: 5
Exon count:
9
Sequence:
Chromosome: 5; NC_003076.8 (24582225..24585818, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene zinc ion binding protein Neighboring gene plasmodesmata callose-binding protein 1 Neighboring gene U5 small nuclear ribonucleoprotein helicase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A histone H3K27me3 reader cooperates with a family of PHD finger-containing proteins to regulate flowering time in Arabidopsis. Qian F, et al. J Integr Plant Biol, 2021 Apr. PMID 33433058
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001345443.1
NM_125505.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables histone reader activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in negative regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
zinc ion-binding protein
NP_200920.3
  • BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT5G61090.1); Has 125 Blast hits to 115 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24582225..24585818 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345444.1 → NP_001332173.1  zinc ion-binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UCE1, A0A1P8BG73

  2. NM_125505.4 → NP_200920.3  zinc ion-binding protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200920.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K200, Q5PNY7, Q9FNQ3
    UniProtKB/TrEMBL
    A0A178UCE1, A0A7G2FKU7

  3. NM_001345443.1 → NP_001332172.1  zinc ion-binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UCE1, A0A1P8BG63
Nucleotide Protein
Heading Accession and Version

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