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U5 small nuclear ribonucleoprotein helicase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836235, updated on 18-Sep-2024

Summary

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Official Full Name
U5 small nuclear ribonucleoprotein helicase
Primary source
TAIR:AT5G61140
Locus tag
AT5G61140
See related
Araport:AT5G61140
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MAF19.14; MAF19_14
Summary
Encodes a predicted protein with 30% identity with MER3/RCK.
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Genomic context

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Location:
chromosome: 5
Exon count:
49
Sequence:
Chromosome: 5; NC_003076.8 (24589906..24603522)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene zinc ion-binding protein Neighboring gene plasmodesmata callose-binding protein 1 Neighboring gene leo1-like family protein Neighboring gene anthocyanin 5-aromatic acyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_125507.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding HDA PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
U5 small nuclear ribonucleoprotein helicase
NP_001190584.1
  • U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2).
NP_200922.2
  • U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2); Has 20721 Blast hits to 12373 proteins in 2023 species: Archae - 1746; Bacteria - 9151; Metazoa - 2213; Fungi - 2164; Plants - 862; Viruses - 60; Other Eukaryotes - 4525 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24589906..24603522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001203655.2 → NP_001190584.1  U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190584.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RY91, Q9FNQ1
    UniProtKB/TrEMBL
    A0A654GD05, A0A7G2FLX9
    Conserved Domains (2) summary
    COG1204
    Location:478 → 1273
    BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
    cd18022
    Location:1355 → 1543
    DEXHc_ASCC3_2; C-terminal DEXH-box helicase domain of Activating signal cointegrator 1 complex subunit 3

  2. NM_125507.2 → NP_200922.2  U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200922.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FLX9, F4K203
    Conserved Domains (6) summary
    smart00490
    Location:1630 → 1711
    HELICc; helicase superfamily c-terminal domain
    smart00487
    Location:1340 → 1543
    DEXDc; DEAD-like helicases superfamily
    COG1204
    Location:478 → 1262
    BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
    cd00079
    Location:710 → 897
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam00270
    Location:509 → 686
    DEAD; DEAD/DEAH box helicase
    pfam02889
    Location:1008 → 1304
    Sec63; Sec63 Brl domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FNQ1.1

Gene LinkOut

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