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rRNA processing protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836254, updated on 18-Sep-2024

Summary

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Official Full Name
rRNA processing protein-like protein
Primary source
TAIR:AT5G61330
Locus tag
AT5G61330
See related
Araport:AT5G61330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MFB13.10; MFB13_10
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Genomic context

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Location:
chromosome: 5
Exon count:
14
Sequence:
Chromosome: 5; NC_003076.8 (24657097..24661241, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Cytochrome c oxidase subunit Vc family protein Neighboring gene cytochrome P450, family 89, subfamily A, polypeptide 3 Neighboring gene uncharacterized protein Neighboring gene tRNA-Lys

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001345470.1
NM_001345471.1
NM_125526.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
rRNA processing protein-like protein
NP_200941.2
  • rRNA processing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAUB (InterPro:IPR012617); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24657097..24661241 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125526.5 → NP_200941.2  rRNA processing protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200941.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GD02, Q84W09, Q9FLK0
    Conserved Domains (2) summary
    pfam08164
    Location:350 → 425
    TRAUB; Apoptosis-antagonizing transcription factor, C-terminal
    pfam13339
    Location:143 → 271
    AATF-Che1; Apoptosis antagonizing transcription factor

  2. NM_001345470.1 → NP_001331141.1  rRNA processing protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BD18, A0A5S9YGQ0

  3. NM_001345471.1 → NP_001331140.1  rRNA processing protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GD02, Q84W09, Q9FLK0
    Conserved Domains (2) summary
    pfam08164
    Location:350 → 425
    TRAUB; Apoptosis-antagonizing transcription factor, C-terminal
    pfam13339
    Location:143 → 271
    AATF-Che1; Apoptosis antagonizing transcription factor
Nucleotide Protein
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