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Embryo-specific protein 3, (ATS3) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836341, updated on 18-Sep-2024

Summary

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Official Full Name
Embryo-specific protein 3, (ATS3)
Primary source
TAIR:AT5G62200
Locus tag
AT5G62200
See related
Araport:AT5G62200
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MMI9.3; MMI9_3
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (24984048..24985895, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene carboxyesterase 20 Neighboring gene DEAD box RNA helicase (PRH75) Neighboring gene Embryo-specific protein 3, (ATS3) Neighboring gene glycosyltransferase 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis lectin EULS3 is involved in stomatal closure. Van Hove J, et al. Plant Sci, 2015 Sep. PMID 26259197
  2. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
  3. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
  4. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
  5. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_125614.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plastid HDA PubMed 

General protein information

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Preferred Names
Embryo-specific protein 3, (ATS3)
NP_201026.1
  • Embryo-specific protein 3, (ATS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: Embryo-specific protein 3, (ATS3) (TAIR:AT2G41475.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24984048..24985895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125614.4 → NP_201026.1  Embryo-specific protein 3, (ATS3) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201026.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q680D1, Q6NPM5, Q9LVB6
    UniProtKB/TrEMBL
    A0A178URV8, A0A5S9YG87, A0A654GDB6
    Conserved Domains (1) summary
    pfam06232
    Location:35 → 158
    ATS3; Embryo-specific protein 3, (ATS3)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NPM5.1

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