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Embryo-specific protein 3, (ATS3) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836342, updated on 18-Sep-2024

Summary

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Official Full Name
Embryo-specific protein 3, (ATS3)
Primary source
TAIR:AT5G62210
Locus tag
AT5G62210
See related
Araport:AT5G62210
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MMI9.4; MMI9_4
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (24986294..24987811, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DEAD box RNA helicase (PRH75) Neighboring gene Embryo-specific protein 3, (ATS3) Neighboring gene glycosyltransferase 18 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
  2. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_125615.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
Embryo-specific protein 3, (ATS3)
NP_201027.1
  • Embryo-specific protein 3, (ATS3); CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: seed gene 3 (TAIR:AT5G07190.1); Has 13635 Blast hits to 5538 proteins in 466 species: Archae - 12; Bacteria - 1109; Metazoa - 3835; Fungi - 1100; Plants - 4139; Viruses - 1069; Other Eukaryotes - 2371 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24986294..24987811 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125615.3 → NP_201027.1  Embryo-specific protein 3, (ATS3) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201027.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GDH9, A0A7G2FI64, Q9LVB5
    Conserved Domains (1) summary
    pfam06232
    Location:27 → 152
    ATS3; Embryo-specific protein 3, (ATS3)
Nucleotide Protein
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