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ARR6 response regulator 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836412, updated on 18-Sep-2024

Summary

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Official Symbol
ARR6
Official Full Name
response regulator 6
Primary source
TAIR:AT5G62920
Locus tag
AT5G62920
See related
Araport:AT5G62920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MQB2.220; MQB2_220; response regulator 6
Summary
Encodes a Type-A response regulator that is responsive to cytokinin treatment. Its C-ter domain is very short in comparison to other Arabidopsis ARRs (17 total). Arr6 protein is stabilized by cytokinin.
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Genomic context

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See ARR6 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (25252007..25254318, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Xanthine/uracil permease family protein Neighboring gene basic-leucine zipper transcription factor K Neighboring gene RING/U-box superfamily protein Neighboring gene SGNH hydrolase-type esterase superfamily protein Neighboring gene Dof-type zinc finger DNA-binding family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cytokinin Response Factor 9 Represses Cytokinin Responses in Flower Development. Swinka C, et al. Int J Mol Sci, 2023 Feb 22. PMID 36901811, Free PMC Article
  2. In planta analysis of a cis-regulatory cytokinin response motif in Arabidopsis and identification of a novel enhancer sequence. Ramireddy E, et al. Plant Cell Physiol, 2013 Jul. PMID 23620480
  3. Characterization of the response of the Arabidopsis response regulator gene family to cytokinin. D'Agostino IB, et al. Plant Physiol, 2000 Dec. PMID 11115887, Free PMC Article
  4. Response regulators implicated in His-to-Asp phosphotransfer signaling in Arabidopsis. Imamura A, et al. Proc Natl Acad Sci U S A, 1998 Mar 3. PMID 9482949, Free PMC Article
  5. ABI4 represses the expression of type-A ARRs to inhibit seed germination in Arabidopsis. Huang X, et al. Plant J, 2017 Jan. PMID 27711992

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Cytokinin Response Factor 9 Represses Cytokinin Responses in Flower Development.
    Title: Cytokinin Response Factor 9 Represses Cytokinin Responses in Flower Development.
  2. ARR6 is direct targets of ABI4.ARR6 negatively regulate abscisic acid-mediated inhibition of germination.
    Title: ABI4 represses the expression of type-A ARRs to inhibit seed germination in Arabidopsis.
  3. Data indicate that one of the immediate early cytokinin response genes is ARR6, which has been shown to be a direct target gene of ARR1, ARR2 and other type-B ARRs.
    Title: In planta analysis of a cis-regulatory cytokinin response motif in Arabidopsis and identification of a novel enhancer sequence.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_125686.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables phosphorelay response regulator activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables phosphorelay response regulator activity TAS
Traceable Author Statement
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cytokinin-activated signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within cytokinin-activated signaling pathway TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within phosphorelay signal transduction system TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within response to cytokinin IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in intracellular anatomical structure TAS
Traceable Author Statement
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
response regulator 6
NP_201097.1
  • response regulator 6 (ARR6); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 5 (TAIR:AT3G48100.1); Has 47436 Blast hits to 46969 proteins in 2667 species: Archae - 260; Bacteria - 41739; Metazoa - 17; Fungi - 503; Plants - 1416; Viruses - 4; Other Eukaryotes - 3497 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25252007..25254318 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125686.3 → NP_201097.1  response regulator 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201097.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZWS6, Q9ZWS8
    UniProtKB/TrEMBL
    A0A178UKS7, A0A384LHQ6, A0A7G2FK65, Q0WSS6
    Conserved Domains (1) summary
    cd17581
    Location:27 → 148
    REC_typeA_ARR; phosphoacceptor receiver (REC) domain of type A Arabidopsis response regulators (ARRs) and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZWS6.2

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