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Nucleotide-sugar transporter family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836624, updated on 18-Sep-2024

Summary

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Official Full Name
Nucleotide-sugar transporter family protein
Primary source
TAIR:AT5G65000
Locus tag
AT5G65000
See related
Araport:AT5G65000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MXK3.23; MXK3_23
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (25964929..25967449, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene transcription factor Neighboring gene RAB GTPase homolog H1A Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene asparagine synthetase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Loss of THIN EXINE2 disrupts multiple processes in the mechanism of pollen exine formation. Wang R, et al. Plant Physiol, 2021 Sep 4. PMID 34618131, Free PMC Article
  2. Arabidopsis ROCK1 transports UDP-GlcNAc/UDP-GalNAc and regulates ER protein quality control and cytokinin activity. Niemann MC, et al. Proc Natl Acad Sci U S A, 2015 Jan 6. PMID 25535363, Free PMC Article
  3. Plant-specific small peptide AtZSP1 interacts with ROCK1 to regulate organ size in Arabidopsis. Zeng Y, et al. New Phytol, 2022 Jun. PMID 35285523
  4. A large-scale genetic screen in Arabidopsis to identify genes involved in pollen exine production. Dobritsa AA, et al. Plant Physiol, 2011 Oct. PMID 21849515, Free PMC Article
  5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Loss of THIN EXINE2 disrupts multiple processes in the mechanism of pollen exine formation.
    Title: Loss of THIN EXINE2 disrupts multiple processes in the mechanism of pollen exine formation.
  2. ROCK1 activity is an important part of the endoplasmic reticulum quality control system, which determines the fate of aberrant proteins in the secretory pathway.[ROCK1]
    Title: Arabidopsis ROCK1 transports UDP-GlcNAc/UDP-GalNAc and regulates ER protein quality control and cytokinin activity.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_125899.4
NM_203266.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables UDP-N-acetylgalactosamine transmembrane transporter activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables sialic acid transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within UDP-N-acetylgalactosamine transmembrane transport IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within UDP-N-acetylglucosamine transmembrane transport IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within negative regulation of ERAD pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pollen exine formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of shoot apical meristem development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in sialic acid transport ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Nucleotide-sugar transporter family protein
NP_569004.1
  • Nucleotide-sugar transporter family protein; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: integral to membrane, Golgi membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271), UDP/CMP-sugar transporter (InterPro:IPR021189); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT4G35335.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_974995.1
  • Nucleotide-sugar transporter family protein; FUNCTIONS IN: nucleotide-sugar transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, nucleotide-sugar transport; LOCATED IN: integral to membrane, Golgi membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide-sugar transporter (InterPro:IPR007271); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25964929..25967449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125899.4 → NP_569004.1  Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_569004.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0JQ95, Q8LES0, Q8VYH1, Q9LV78
    UniProtKB/TrEMBL
    A0A178UN84, A0A5S9YH66, A0A654GE75
    Conserved Domains (1) summary
    pfam04142
    Location:46 → 312
    Nuc_sug_transp; Nucleotide-sugar transporter

  2. NM_203266.2 → NP_974995.1  Nucleotide-sugar transporter family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974995.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LES0
    Conserved Domains (1) summary
    pfam04142
    Location:46 → 242
    Nuc_sug_transp; Nucleotide-sugar transporter
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LES0.1

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