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Histone superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836661, updated on 18-Sep-2024

Summary

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Official Full Name
Histone superfamily protein
Primary source
TAIR:AT5G65360
Locus tag
AT5G65360
See related
Araport:AT5G65360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
H3.1; histone 3.1; MNA5.9
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (26119859..26120581, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene histone 3 11 Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene MATE efflux family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The histone H3.1 variant regulates TONSOKU-mediated DNA repair during replication. Davarinejad H, et al. Science, 2022 Mar 18. PMID 35298257, Free PMC Article
  2. Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication. Jacob Y, et al. Science, 2014 Mar 14. PMID 24626927, Free PMC Article
  3. The chromodomain of LIKE HETEROCHROMATIN PROTEIN 1 is essential for H3K27me3 binding and function during Arabidopsis development. Exner V, et al. PLoS One, 2009. PMID 19399177, Free PMC Article
  4. AtMBD9 modulates Arabidopsis development through the dual epigenetic pathways of DNA methylation and histone acetylation. Yaish MW, et al. Plant J, 2009 Jul. PMID 19419532
  5. Regulation of arabidopsis flowering by the histone mark readers MRG1/2 via interaction with CONSTANS to modulate FT expression. Bu Z, et al. PLoS Genet, 2014 Sep. PMID 25211338, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The histone H3.1 variant regulates TONSOKU-mediated DNA repair during replication.
    Title: The histone H3.1 variant regulates TONSOKU-mediated DNA repair during replication.
  2. this study identifies a histone-modifying enzyme ATXR5 that selectively methylates the replication-dependent histone H3 variant H3.1.
    Title: Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_125934.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromocenter IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in plastid HDA PubMed 

General protein information

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Preferred Names
Histone superfamily protein
NP_201339.1
  • Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: chloroplast, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G10400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26119859..26120581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125934.2 → NP_201339.1  Histone superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201339.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P59226
    UniProtKB/TrEMBL
    A0A178WG20, A0A384L1I5, A0A5S9TDX4, Q0WRA9
    Conserved Domains (1) summary
    PTZ00018
    Location:1 → 136
    PTZ00018; histone H3; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P59226.2

Gene LinkOut

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Molecular Biology Databases
Research Materials