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hypothetical protein (DUF295) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837056, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein (DUF295)
Primary source
TAIR:AT1G05540
Locus tag
AT1G05540
See related
Araport:AT1G05540
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T25N20.19
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (1639223..1640879)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene naphthalene 1,2-dioxygenase subunit alpha (DUF1264) Neighboring gene Sec23/Sec24 protein transport family protein Neighboring gene UDP-glucosyl transferase 75B2 Neighboring gene hypothetical protein (DUF295) Neighboring gene ncRNA Neighboring gene UDP-glucosyltransferase 75B1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_100433.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hypothetical protein (DUF295)
NP_172045.1
  • Protein of unknown function (DUF295); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G30160.2); Has 218 Blast hits to 208 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 218; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1639223..1640879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331552.1 → NP_001320743.1  hypothetical protein (DUF295) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJ75, A0A1P8ANS4, A0A384LIC6

  2. NM_100433.4 → NP_172045.1  hypothetical protein (DUF295) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172045.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WJ68, A0A5S9SSX7, Q9ZVY4
    Conserved Domains (1) summary
    pfam03478
    Location:294 → 337
    DUF295; Protein of unknown function (DUF295)
Nucleotide Protein
Heading Accession and Version

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