pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: pfkB-like carbohydrate kinase family protein
Primary source: TAIR:AT1G06020
Locus tag: AT1G06020
See related: Araport:AT1G06020
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: T21E18.7; T21E18_7
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 4

Sequence:: Chromosome: 1; NC_003070.9 (1824250..1826163)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_100482.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables fructokinase activity	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within fructose metabolic process	IDA Inferred from Direct Assay more info	PubMed
involved_in starch biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	ISM Inferred from Sequence Model more info
located_in cytosol	IDA Inferred from Direct Assay more info	PubMed
located_in extracellular region	HDA more info	PubMed

General protein information

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Preferred Names: pfkB-like carbohydrate kinase family protein

NP_172092.1

pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process, acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase; EXPRESSED IN: central cell, embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT1G06030.1); Has 19243 Blast hits to 19237 proteins in 2432 species: Archae - 396; Bacteria - 14376; Metazoa - 170; Fungi - 128; Plants - 499; Viruses - 0; Other Eukaryotes - 3674 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

1824250..1826163

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_100482.2 → NP_172092.1 pfkB-like carbohydrate kinase family protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_172092.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q9LNE4

UniProtKB/TrEMBL

A0A178WEN7, A0A178WHF2, A0A5S9SVB2

Conserved Domains (1) summary

PLN02323
Location:1 → 328

PLN02323; probable fructokinase