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RHON1 Rho termination factor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837128, updated on 18-Sep-2024

Summary

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Official Symbol
RHON1
Official Full Name
Rho termination factor
Primary source
TAIR:AT1G06190
Locus tag
AT1G06190
See related
Araport:AT1G06190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F9P14.5; F9P14_5; Rho-N 1
Summary
Encodes a novel ribonucleic acid-binding protein that interacts with the endonuclease RNase E and supports its function in processing plastid ribonucleic acids.
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Genomic context

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See RHON1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (1892231..1894194, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene myb domain protein 13 Neighboring gene Peptidase S24/S26A/S26B/S26C family protein Neighboring gene ENTH/VHS/GAT family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RHON1 Co-transcriptionally Resolves R-Loops for Arabidopsis Chloroplast Genome Maintenance. Yang Z, et al. Cell Rep, 2020 Jan 7. PMID 31914390
  2. RHON1 mediates a Rho-like activity for transcription termination in plastids of Arabidopsis thaliana. Chi W, et al. Plant Cell, 2014 Dec. PMID 25480370, Free PMC Article
  3. RHON1 is a novel ribonucleic acid-binding protein that supports RNase E function in the Arabidopsis chloroplast. Stoppel R, et al. Nucleic Acids Res, 2012 Sep 1. PMID 22735703, Free PMC Article
  4. Mining the soluble chloroplast proteome by affinity chromatography. Bayer RG, et al. Proteomics, 2011 Apr. PMID 21365755, Free PMC Article
  5. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. RHON1 Co-transcriptionally Resolves R-Loops for Arabidopsis Chloroplast Genome Maintenance.
    Title: RHON1 Co-transcriptionally Resolves R-Loops for Arabidopsis Chloroplast Genome Maintenance.
  2. RHON1 terminates rbcL transcription using an ATP-driven mechanism similar to that of Rho of Escherichia coli.
    Title: RHON1 mediates a Rho-like activity for transcription termination in plastids of Arabidopsis thaliana.
  3. RHON1 is essential for photoautotrophic growth and together with RNE forms a distinct 800 kDa complex. [RHON1]
    Title: RHON1 is a novel ribonucleic acid-binding protein that supports RNase E function in the Arabidopsis chloroplast.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001083997.1
NM_001331617.1
NM_001331618.1
NM_001331619.1
NM_100500.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables rRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription termination IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chloroplast mRNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within chloroplast rRNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast IMP
Inferred from Mutant Phenotype
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in extracellular region HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Rho termination factor
NP_001077466.1
  • Rho termination factor; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 63 Blast hits to 63 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 41; Viruses - 3; Other Eukaryotes - 4 (source: NCBI BLink).
NP_563761.1
  • Rho termination factor; FUNCTIONS IN: transcription termination factor activity, ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding; INVOLVED IN: transcription termination, ATP biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rho termination factor, N-terminal (InterPro:IPR011112), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757); BEST Arabidopsis thaliana protein match is: ATP binding;ATPases, coupled to transmembrane movement of ions, phosphorylative mechanism (TAIR:AT2G31150.1); Has 1888 Blast hits to 1636 proteins in 313 species: Archae - 6; Bacteria - 275; Metazoa - 547; Fungi - 247; Plants - 133; Viruses - 50; Other Eukaryotes - 630 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1892231..1894194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100500.4 → NP_563761.1  Rho termination factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563761.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MQM6, Q8LFT8, Q94K75, Q9LNC8
    UniProtKB/TrEMBL
    A0A654E7F0
    Conserved Domains (1) summary
    smart00959
    Location:363 → 394
    Rho_N; Rho termination factor, N-terminal domain

  2. NM_001331617.1 → NP_001320173.1  Rho termination factor [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AM09

  3. NM_001331618.1 → NP_001320171.1  Rho termination factor [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AM09

  4. NM_001331619.1 → NP_001320172.1  Rho termination factor [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AM12, A0A654E7F0

  5. NM_001083997.1 → NP_001077466.1  Rho termination factor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077466.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94K75
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q94K75.1

Gene LinkOut

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