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TPS7 trehalose-phosphatase/synthase 7 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837152, updated on 18-Sep-2024

Summary

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Official Symbol
TPS7
Official Full Name
trehalose-phosphatase/synthase 7
Primary source
TAIR:AT1G06410
Locus tag
AT1G06410
See related
Araport:AT1G06410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATTPS7; ATTPSA; T2D23.11; T2D23_11; TREHALOSE -6-PHOSPHATASE SYNTHASE S7; trehalose-phosphatase/synthase 7
Summary
Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.
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Genomic context

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See TPS7 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (1954674..1958866)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GSK3/SHAGGY-like protein kinase 1 Neighboring gene Ras-related small GTP-binding family protein Neighboring gene ncRNA Neighboring gene DNA ligase-like protein Neighboring gene FTSH protease 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Trehalose metabolism in Arabidopsis: occurrence of trehalose and molecular cloning and characterization of trehalose-6-phosphate synthase homologues. Vogel G, et al. J Exp Bot, 2001 Sep. PMID 11520870
  2. Extensive expression regulation and lack of heterologous enzymatic activity of the Class II trehalose metabolism proteins from Arabidopsis thaliana. Ramon M, et al. Plant Cell Environ, 2009 Aug. PMID 19344332
  3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001331626.1
NM_001331627.1
NM_100521.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
NOT enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
NOT enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables glycosyltransferase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
NOT enables trehalose-phosphatase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
NOT enables trehalose-phosphatase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
trehalose-phosphatase/synthase 7
NP_172129.1
  • trehalose-phosphatase/synthase 7 (TPS7); FUNCTIONS IN: transferase activity, transferring glycosyl groups, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose phosphatase/synthase 5 (TAIR:AT4G17770.1); Has 4234 Blast hits to 4163 proteins in 1008 species: Archae - 52; Bacteria - 2285; Metazoa - 161; Fungi - 658; Plants - 607; Viruses - 0; Other Eukaryotes - 471 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1954674..1958866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100521.3 → NP_172129.1  trehalose-phosphatase/synthase 7 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172129.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WPW3, Q9LMI0
    UniProtKB/TrEMBL
    A0A178WH64, A0A5S9SXH1
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 838
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  2. NM_001331626.1 → NP_001321476.1  trehalose-phosphatase/synthase 7 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WPW3, Q9LMI0
    UniProtKB/TrEMBL
    A0A178WH64, A0A5S9SXH1
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 838
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  3. NM_001331627.1 → NP_001321475.1  trehalose-phosphatase/synthase 7 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WPW3, Q9LMI0
    UniProtKB/TrEMBL
    A0A178WH64, A0A5S9SXH1
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 838
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LMI0.1

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