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DFO uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837217, updated on 18-Sep-2024

Summary

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Official Symbol
DFO
Official Full Name
uncharacterized protein
Primary source
TAIR:AT1G07060
Locus tag
AT1G07060
See related
Araport:AT1G07060
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATDFO; DSB formation; F10K1.23; F10K1_23
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Genomic context

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See DFO in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (2166348..2168397, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CCT motif family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ribosomal protein L35Ae family protein Neighboring gene Thioredoxin superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis thaliana DSB formation (AtDFO) gene is required for meiotic double-strand break formation. Zhang C, et al. Plant J, 2012 Oct. PMID 22694475
  2. MTOPVIB interacts with AtPRD1 and plays important roles in formation of meiotic DNA double-strand breaks in Arabidopsis. Tang Y, et al. Sci Rep, 2017 Aug 30. PMID 28855712, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in meiotic DNA double-strand break formation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within meiotic DNA double-strand break formation IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within meiotic cell cycle IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_172187.1
  • unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2166348..2168397 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331678.1 → NP_001322524.1  uncharacterized protein AT1G07060 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WMU9

  2. NM_001331679.1 → NP_001322523.1  uncharacterized protein AT1G07060 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WMU9, A0A1P8AU93

  3. NM_100580.2 → NP_172187.1  uncharacterized protein AT1G07060 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172187.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RX33, Q9LMJ9

  4. NM_001331680.1 → NP_001322522.1  uncharacterized protein AT1G07060 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AU91
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8RX33.1

Gene LinkOut

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