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ATMPK13 Protein kinase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837303, updated on 18-Sep-2024

Summary

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Official Symbol
ATMPK13
Official Full Name
Protein kinase superfamily protein
Primary source
TAIR:AT1G07880
Locus tag
AT1G07880
See related
Araport:AT1G07880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24B9.3; F24B9_3
Summary
member of MAP Kinase
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Genomic context

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See ATMPK13 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (2433896..2435858, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Sas10/Utp3/C1D family Neighboring gene transferring glycosyl group transferase (DUF604) Neighboring gene Protein kinase superfamily protein Neighboring gene Serine/Threonine-kinase RLCKVII protein Neighboring gene uncharacterized protein Neighboring gene ascorbate peroxidase 1 Neighboring gene LOB domain-containing protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtMKK6 and AtMPK13 are required for lateral root formation in Arabidopsis. Zeng Q, et al. Plant Signal Behav, 2011 Oct. PMID 21904115, Free PMC Article
  2. The Arabidopsis thaliana MEK AtMKK6 activates the MAP kinase AtMPK13. Melikant B, et al. FEBS Lett, 2004 Oct 8. PMID 15474000
  3. HINKEL kinesin, ANP MAPKKKs and MKK6/ANQ MAPKK, which phosphorylates and activates MPK4 MAPK, constitute a pathway that is required for cytokinesis in Arabidopsis thaliana. Takahashi Y, et al. Plant Cell Physiol, 2010 Oct. PMID 20802223, Free PMC Article
  4. AtMPK4 is required for male-specific meiotic cytokinesis in Arabidopsis. Zeng Q, et al. Plant J, 2011 Sep. PMID 21575092
  5. Mapping out the roles of MAP kinases in plant defense. Innes RW. Trends Plant Sci, 2001 Sep. PMID 11544109

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtMKK6-AtMPK13 module positively regulates lateral root formation.[AtMPK13]
    Title: AtMKK6 and AtMPK13 are required for lateral root formation in Arabidopsis.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001035913.2
NM_100662.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables MAP kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in lateral root formation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within signal transduction IC
Inferred by Curator
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Protein kinase superfamily protein
NP_001030990.1
  • ATMPK13; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), JNK MAP kinase (InterPro:IPR008351), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase 4 (TAIR:AT4G01370.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_172266.2
  • ATMPK13; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: MAP kinase 5 (TAIR:AT4G11330.1); Has 121340 Blast hits to 120172 proteins in 4531 species: Archae - 84; Bacteria - 12928; Metazoa - 46067; Fungi - 12050; Plants - 29427; Viruses - 570; Other Eukaryotes - 20214 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2433896..2435858 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001035913.2 → NP_001030990.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030990.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LQQ9
    UniProtKB/TrEMBL
    A0A5S9T6E5, A0A654EIG6, A0A7G2DV70
    Conserved Domains (1) summary
    cd07858
    Location:26 → 362
    STKc_TEY_MAPK; Catalytic domain of the Serine/Threonine Kinases, Plant TEY Mitogen-Activated Protein Kinases

  2. NM_100662.4 → NP_172266.2  Protein kinase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172266.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WHV9
    Conserved Domains (1) summary
    cl21453
    Location:26 → 249
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LQQ9.1

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