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vacuolar protein sorting-associated protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837347, updated on 18-Sep-2024

Summary

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Official Full Name
vacuolar protein sorting-associated protein
Primary source
TAIR:AT1G08270
Locus tag
AT1G08270
See related
Araport:AT1G08270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T23G18.12; T23G18_12
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (2606269..2607507, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Gly Neighboring gene arogenate dehydratase 6 Neighboring gene DNA polymerase epsilon catalytic subunit Neighboring gene Glycosyltransferase family 29 (sialyltransferase) family protein Neighboring gene WIP domain protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_100700.2
NM_202063.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
vacuolar protein sorting-associated protein
NP_172304.1
  • CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G27600.1); Has 1133 Blast hits to 1133 proteins in 252 species: Archae - 47; Bacteria - 0; Metazoa - 540; Fungi - 145; Plants - 223; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).
NP_973792.1
  • CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G27600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2606269..2607507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_202063.1 → NP_973792.1  vacuolar protein sorting-associated protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973792.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4HW05
    Conserved Domains (1) summary
    cl00299
    Location:1 → 41
    MIT; MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...

  2. NM_100700.2 → NP_172304.1  vacuolar protein sorting-associated protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172304.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W3W4, Q9SGD4
    Conserved Domains (2) summary
    cl00299
    Location:1 → 41
    MIT; domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
    cl38936
    Location:87 → 122
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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