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NF-YC9 nuclear factor Y, subunit C9 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837417, updated on 18-Sep-2024

Summary

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Official Symbol
NF-YC9
Official Full Name
nuclear factor Y, subunit C9
Primary source
TAIR:AT1G08970
Locus tag
AT1G08970
See related
Araport:AT1G08970
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
''nuclear factor Y; F7G19.16; F7G19_16; HAP5C; HEME ACTIVATED PROTEIN 5C; nuclear factor Y; subunit C9; subunit C9''
Summary
heme activated protein (HAP5c)
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Genomic context

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See NF-YC9 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (2882491..2884342)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Pro Neighboring gene cation exchanger 11 Neighboring gene amidase 1 Neighboring gene AP2/B3-like transcriptional factor family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis. Bi C, et al. Plant Mol Biol, 2017 Nov. PMID 28924726, Free PMC Article
  2. Jasmonate signaling pathway confers salt tolerance through a NUCLEAR FACTOR-Y trimeric transcription factor complex in Arabidopsis. Li X, et al. Cell Rep, 2024 Mar 26. PMID 38386555
  3. Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering. Liu X, et al. Plant Physiol, 2018 May. PMID 29599268, Free PMC Article
  4. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Tang Y, et al. Mol Plant, 2017 Feb 13. PMID 27876642
  5. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Liu X, et al. Nat Commun, 2016 Sep 14. PMID 27624486, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Jasmonate signaling pathway confers salt tolerance through a NUCLEAR FACTOR-Y trimeric transcription factor complex in Arabidopsis.
    Title: Jasmonate signaling pathway confers salt tolerance through a NUCLEAR FACTOR-Y trimeric transcription factor complex in Arabidopsis.
  2. A novel mechanism of the NF-YC9-mediated epigenetic regulation of FT protein activation in photoperiod-induced flowering.
    Title: Temporal-Specific Interaction of NF-YC and CURLY LEAF during the Floral Transition Regulates Flowering.
  3. NF-YC9 mediates abscisic acid (ABA) signaling via targeting to and aiding the ABA-responsive transcription factors such as ABI5.
    Title: Overexpression of the transcription factor NF-YC9 confers abscisic acid hypersensitivity in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_100768.4
NM_179288.3
NM_202067.2
NM_202068.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within abscisic acid-activated signaling pathway IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within gibberellic acid mediated signaling pathway IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within positive regulation of photomorphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of seed germination IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm HDA PubMed 
located_in extracellular region HDA PubMed 
located_in nucleus HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
nuclear factor Y, subunit C9
NP_172371.1
  • ''nuclear factor Y, subunit C9'' (NF-YC9); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C3 (TAIR:AT1G54830.3); Has 1343 Blast hits to 1343 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 349; Plants - 427; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).
NP_849619.1
  • ''nuclear factor Y, subunit C9'' (NF-YC9); CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C3 (TAIR:AT1G54830.3); Has 1345 Blast hits to 1345 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 351; Plants - 427; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).
NP_973796.1
  • ''nuclear factor Y, subunit C9'' (NF-YC9); CONTAINS InterPro DOMAIN/s: Histone-fold (InterPro:IPR009072), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C3 (TAIR:AT1G54830.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_973797.1
  • ''nuclear factor Y, subunit C9'' (NF-YC9); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C3 (TAIR:AT1G54830.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2882491..2884342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179288.3 → NP_849619.1  nuclear factor Y, subunit C9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849619.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04033, Q8L4B2, Q9SNZ0
    UniProtKB/TrEMBL
    A0A178WIM6, A0A384LQG6, B9DFS3
    Conserved Domains (1) summary
    COG5208
    Location:62 → 213
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. NM_100768.4 → NP_172371.1  nuclear factor Y, subunit C9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172371.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04033, Q8L4B2, Q9SNZ0
    UniProtKB/TrEMBL
    A0A178WIM6, A0A384LQG6, B9DFS3
    Conserved Domains (1) summary
    COG5208
    Location:62 → 213
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  3. NM_202067.2 → NP_973796.1  nuclear factor Y, subunit C9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973796.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04033, Q8L4B2, Q9SNZ0
    UniProtKB/TrEMBL
    A0A178WIM6, A0A384LQG6, B9DFS3
    Conserved Domains (1) summary
    COG5208
    Location:62 → 213
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  4. NM_202068.2 → NP_973797.1  nuclear factor Y, subunit C9 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973797.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O04033, Q8L4B2, Q9SNZ0
    UniProtKB/TrEMBL
    A0A178WIM6, A0A384LQG6, B9DFS3
    Conserved Domains (1) summary
    COG5208
    Location:62 → 213
    HAP5; CCAAT-binding factor, subunit C [Transcription]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L4B2.1

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