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Metallopeptidase M24 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837451, updated on 18-Sep-2024

Summary

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Official Full Name
Metallopeptidase M24 family protein
Primary source
TAIR:AT1G09300
Locus tag
AT1G09300
See related
Araport:AT1G09300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T31J12.2; T31J12_2
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (3003495..3008381)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Chaperone DnaJ-domain superfamily protein Neighboring gene importin alpha isoform 4 Neighboring gene rhodanese-like domain protein Neighboring gene uncharacterized protein Neighboring gene plant/protein (Protein of unknown function, DUF538) Neighboring gene agenet domain-containing protein Neighboring gene golgi apparatus membrane protein-like protein ECHIDNA protein Neighboring gene chloroplast RNA binding protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. INTERMEDIATE CLEAVAGE PEPTIDASE55 Modifies Enzyme Amino Termini and Alters Protein Stability in Arabidopsis Mitochondria. Huang S, et al. Plant Physiol, 2015 Jun. PMID 25862457, Free PMC Article
  2. Identification of cleavage sites and substrate proteins for two mitochondrial intermediate peptidases in Arabidopsis thaliana. Carrie C, et al. J Exp Bot, 2015 May. PMID 25732537, Free PMC Article
  3. AtOMA1 Affects the OXPHOS System and Plant Growth in Contrast to Other Newly Identified ATP-Independent Proteases in Arabidopsis Mitochondria. Migdal I, et al. Front Plant Sci, 2017. PMID 28936218, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001123782.1
NM_100800.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables aminopeptidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables aminopeptidase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
  
enables metalloaminopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables peptidase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within protein stabilization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Metallopeptidase M24 family protein
NP_001117254.1
  • Metallopeptidase M24 family protein; FUNCTIONS IN: metallopeptidase activity, manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT4G29490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_172401.2
  • Metallopeptidase M24 family protein; FUNCTIONS IN: metallopeptidase activity, manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal (InterPro:IPR007865), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT4G29490.1); Has 16476 Blast hits to 16448 proteins in 2755 species: Archae - 330; Bacteria - 11247; Metazoa - 589; Fungi - 576; Plants - 221; Viruses - 0; Other Eukaryotes - 3513 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3003495..3008381
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001123782.1 → NP_001117254.1  Metallopeptidase M24 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117254.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9TG91, A0A654E964
    Conserved Domains (3) summary
    PRK10879
    Location:24 → 430
    PRK10879; proline aminopeptidase P II; Provisional
    cd01087
    Location:186 → 417
    Prolidase; Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on ...
    pfam05195
    Location:26 → 144
    AMP_N; Aminopeptidase P, N-terminal domain

  2. NM_100800.4 → NP_172401.2  Metallopeptidase M24 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172401.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4HZG9, F4HZH0, Q8GYQ0, Q9ZPZ5, W6HYK5
    UniProtKB/TrEMBL
    A0A5S9TG91, A0A654E964
    Conserved Domains (2) summary
    cd01087
    Location:217 → 448
    Prolidase; Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on ...
    pfam05195
    Location:57 → 173
    AMP_N; Aminopeptidase P, N-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4HZG9.1

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