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glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837540, updated on 18-Sep-2024

Summary

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Official Full Name
glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
Primary source
TAIR:AT1G10050
Locus tag
AT1G10050
See related
Araport:AT1G10050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATXYN2; T27I1.7; T27I1_7
Summary
Encodes a putative glycosyl hydrolase family 10 protein (xylanase).
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (3278792..3283631)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene formin-like protein (DUF1005) Neighboring gene ergosterol biosynthesis protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene branched-chain amino acid transaminase 1 Neighboring gene branched-chain amino acid transaminase 2 Neighboring gene Early-responsive to dehydration stress protein (ERD4)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A xylanase, AtXyn1, is predominantly expressed in vascular bundles, and four putative xylanase genes were identified in the Arabidopsis thaliana genome. Suzuki M, et al. Plant Cell Physiol, 2002 Jul. PMID 12154138
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_100879.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables endo-1,4-beta-xylanase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
NP_172476.1
  • glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G58370.1); Has 2595 Blast hits to 2245 proteins in 443 species: Archae - 10; Bacteria - 1438; Metazoa - 33; Fungi - 351; Plants - 403; Viruses - 0; Other Eukaryotes - 360 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3278792..3283631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331878.1 → NP_001322538.1  glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80596
    UniProtKB/TrEMBL
    A0A178W1P5
    Conserved Domains (2) summary
    smart00633
    Location:757 → 1003
    Glyco_10; Glycosyl hydrolase family 10
    pfam02018
    Location:183 → 315
    CBM_4_9; Carbohydrate binding domain

  2. NM_001331879.1 → NP_001322539.1  glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W1L8, A0A1P8AUA7

  3. NM_100879.2 → NP_172476.1  glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172476.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80596
    UniProtKB/TrEMBL
    A0A178W1P5
    Conserved Domains (2) summary
    smart00633
    Location:757 → 1003
    Glyco_10; Glycosyl hydrolase family 10
    pfam02018
    Location:183 → 315
    CBM_4_9; Carbohydrate binding domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O80596.1

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