U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Z-ISO 15-cis-zeta-carotene isomerase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837626, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
Z-ISO
Official Full Name
15-cis-zeta-carotene isomerase
Primary source
TAIR:AT1G10830
Locus tag
AT1G10830
See related
Araport:AT1G10830
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
15-cis-zeta-carotene isomerase; T16B5.3; T16B5_3; Z-ISO1.1; Z-ISO1.2
Summary
Encodes a functional 15-cis-zeta-carotene isomerase (Z-ISO).
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Z-ISO in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (3605512..3607580, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene NAD(P)-linked oxidoreductase superfamily protein Neighboring gene hypothetical protein (DUF3755) Neighboring gene translation initiation factor 3 subunit H1 Neighboring gene ncRNA Neighboring gene Leucine-rich repeat protein kinase family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoid biosynthesis in plants. Chen Y, et al. Plant Physiol, 2010 May. PMID 20335404, Free PMC Article
  2. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Z-ISO is a chloroplast-localized protein that plays a role in carotenoid biosynthesis.
    Title: Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoid biosynthesis in plants.
  2. At1g10830.1 encodes 15 cis zetacarotene isomerase (Z-ISO), a new enzyme required for carotenoid biosynthesis in plants. The shorter transcript At1g10830.2 gene product does not have enzyme activity. [Z-ISO]
    Title: Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoid biosynthesis in plants.
Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

Homology

NM_001123792.1
NM_001331932.1
NM_100959.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables 9,15,9'-tri-cis-zeta-carotene isomerase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within carotene biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
15-cis-zeta-carotene isomerase
NP_001117264.1
  • 15-cis-zeta-carotene isomerase (Z-ISO); FUNCTIONS IN: 9,15,9'-tri-cis-zeta-carotene isomerase activity; INVOLVED IN: carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NnrU (InterPro:IPR009915); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_563879.1
  • 15-cis-zeta-carotene isomerase (Z-ISO); FUNCTIONS IN: 9,15,9'-tri-cis-zeta-carotene isomerase activity; INVOLVED IN: carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NnrU (InterPro:IPR009915); Has 373 Blast hits to 373 proteins in 102 species: Archae - 0; Bacteria - 164; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3605512..3607580 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100959.5 → NP_563879.1  15-cis-zeta-carotene isomerase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563879.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B3H769, Q8LD73, Q9SAC0
    UniProtKB/TrEMBL
    A0A178W2K4, A0A5S9TQ56, A0A654E8S1
    Conserved Domains (1) summary
    COG4094
    Location:140 → 367
    COG4094; Uncharacterized membrane protein [Function unknown]

  2. NM_001331932.1 → NP_001323336.1  15-cis-zeta-carotene isomerase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AWQ2

  3. NM_001123792.1 → NP_001117264.1  15-cis-zeta-carotene isomerase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117264.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SAC0
    Conserved Domains (1) summary
    cl17713
    Location:140 → 265
    NnrU; NnrU protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SAC0.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.