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S-locus lectin protein kinase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837683, updated on 18-Sep-2024

Summary

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Official Full Name
S-locus lectin protein kinase family protein
Primary source
TAIR:AT1G11410
Locus tag
AT1G11410
See related
Araport:AT1G11410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T23J18.8; T23J18_8
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (3840877..3844479)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene PLAC8 family protein Neighboring gene Protein kinase superfamily protein Neighboring gene partner of Y14-MAGO Neighboring gene ncRNA Neighboring gene agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 2) Neighboring gene plastid developmental protein DAG Neighboring gene uncharacterized protein Neighboring gene nodulin MtN21 /EamA-like transporter family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001331984.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calmodulin binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in recognition of pollen IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
S-locus lectin protein kinase family protein
NP_001318981.1
  • S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine/threonine-protein kinase domain (InterPro:IPR002290), EGF-like, type 3 (InterPro:IPR000742), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11340.1); Has 122302 Blast hits to 120413 proteins in 4701 species: Archae - 118; Bacteria - 13948; Metazoa - 44921; Fungi - 9999; Plants - 35002; Viruses - 441; Other Eukaryotes - 17873 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    3840877..3844479
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331985.1 → NP_001320418.1  S-locus lectin protein kinase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDZ2, A0A1P8AMR1, A0A5S9TTY2

  2. NM_001331986.1 → NP_001320417.1  S-locus lectin protein kinase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDZ2, A0A1P8AMT2

  3. NM_101014.4 → NP_172608.3  S-locus lectin protein kinase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WDZ2, A0A1P8AMR8
    Conserved Domains (5) summary
    cd14066
    Location:536 → 800
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    pfam00954
    Location:215 → 326
    S_locus_glycop; S-locus glycoprotein domain
    pfam01453
    Location:77 → 183
    B_lectin; D-mannose binding lectin
    pfam08276
    Location:349 → 416
    PAN_2; PAN-like domain
    pfam11883
    Location:806 → 852
    DUF3403; Domain of unknown function (DUF3403)

  4. NM_001331984.1 → NP_001318981.1  S-locus lectin protein kinase family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LPZ3
    UniProtKB/TrEMBL
    A0A178WDZ2, A0A654E8X4
    Conserved Domains (5) summary
    cd14066
    Location:529 → 793
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    pfam00954
    Location:208 → 319
    S_locus_glycop; S-locus glycoprotein domain
    pfam01453
    Location:70 → 176
    B_lectin; D-mannose binding lectin
    pfam08276
    Location:342 → 409
    PAN_2; PAN-like domain
    pfam11883
    Location:799 → 845
    DUF3403; Domain of unknown function (DUF3403)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LPZ3.3

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