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Vacuolar calcium-binding protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837760, updated on 18-Sep-2024

Summary

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Official Full Name
Vacuolar calcium-binding protein-like protein
Primary source
TAIR:AT1G12080
Locus tag
AT1G12080
See related
Araport:AT1G12080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12F1.4; F12F1_4
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (4084162..4085185)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Immunoglobulin E-set superfamily protein Neighboring gene extensin-like protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptional Induction of Two Genes for CCaPs, Novel Cytosolic Proteins, in Arabidopsis thaliana in the Dark. Ide Y, et al. Plant Cell Physiol, 2007 Jan. PMID 17145720
  2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_101080.2
NM_179319.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_positive_effect cellular response to gibberellin stimulus IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_positive_effect cellular response to sucrose starvation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_positive_effect response to absence of light IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_negative_effect response to calcium ion IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_positive_effect response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_positive_effect response to glucose IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_positive_effect response to mannitol IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_negative_effect response to metal ion IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_negative_effect response to molecule of bacterial origin IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_positive_effect response to salt IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_positive_effect response to sorbitol IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in cytosol IDA
Inferred from Direct Assay
more info
 PubMed 
located_in extracellular region HDA PubMed 

General protein information

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Preferred Names
Vacuolar calcium-binding protein-like protein
NP_563898.1
  • Vacuolar calcium-binding protein-related; Has 7161 Blast hits to 3135 proteins in 433 species: Archae - 55; Bacteria - 867; Metazoa - 2008; Fungi - 476; Plants - 327; Viruses - 233; Other Eukaryotes - 3195 (source: NCBI BLink).
NP_849650.1
  • Vacuolar calcium-binding protein-related; BEST Arabidopsis thaliana protein match is: Vacuolar calcium-binding protein-related (TAIR:AT1G62480.1); Has 21609 Blast hits to 9169 proteins in 1089 species: Archae - 145; Bacteria - 3596; Metazoa - 6157; Fungi - 1827; Plants - 760; Viruses - 333; Other Eukaryotes - 8791 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4084162..4085185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179319.5 → NP_849650.1  Vacuolar calcium-binding protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849650.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O65370, Q8LC93
    UniProtKB/TrEMBL
    A0A178WMP5

  2. NM_101080.2 → NP_563898.1  Vacuolar calcium-binding protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563898.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8LC93
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O65370.1

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