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Pentapeptide repeat-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837778, updated on 18-Sep-2024

Summary

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Official Full Name
Pentapeptide repeat-containing protein
Primary source
TAIR:AT1G12250
Locus tag
AT1G12250
See related
Araport:AT1G12250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T28K15.2; T28K15_2
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (4159227..4161506)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Glycosyl hydrolases family 32 protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene NAC 007 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of potential targets for thylakoid oxidoreductase AtVKOR/LTO1 in chloroplasts. Lu Y, et al. Protein Pept Lett, 2014. PMID 25412899
  2. Thioredoxin targets of the plant chloroplast lumen and their implications for plastid function. Hall M, et al. Proteomics, 2010 Mar. PMID 20049866
  3. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
  4. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
  5. AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins. Ferro M, et al. Mol Cell Proteomics, 2010 Jun. PMID 20061580, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084054.1
NM_001332025.1
NM_101097.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast thylakoid HDA PubMed 
located_in chloroplast thylakoid lumen IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
located_in extracellular region HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in thylakoid HDA PubMed 

General protein information

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Preferred Names
Pentapeptide repeat-containing protein
NP_001077523.1
  • Pentapeptide repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 7775 Blast hits to 4220 proteins in 505 species: Archae - 143; Bacteria - 5794; Metazoa - 1; Fungi - 0; Plants - 235; Viruses - 4; Other Eukaryotes - 1598 (source: NCBI BLink).
NP_563902.1
  • Pentapeptide repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 7687 Blast hits to 4280 proteins in 513 species: Archae - 134; Bacteria - 5724; Metazoa - 1; Fungi - 0; Plants - 235; Viruses - 4; Other Eukaryotes - 1589 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4159227..4161506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101097.4 → NP_563902.1  Pentapeptide repeat-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563902.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H1Q1, Q94C72, Q9FWX1
    UniProtKB/TrEMBL
    A0A5S9TZ83, A0A654EJV9
    Conserved Domains (2) summary
    pfam00805
    Location:125 → 168
    Pentapeptide; Pentapeptide repeats (8 copies)
    pfam13599
    Location:131 → 206
    Pentapeptide_4; Pentapeptide repeats (9 copies)

  2. NM_001332025.1 → NP_001321169.1  Pentapeptide repeat-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W1Q3, A0A1P8AQ24, A0A384KM96

  3. NM_001084054.1 → NP_001077523.1  Pentapeptide repeat-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077523.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B6EUA5
    Conserved Domains (2) summary
    pfam00805
    Location:51 → 94
    Pentapeptide; Pentapeptide repeats (8 copies)
    pfam13599
    Location:57 → 132
    Pentapeptide_4; Pentapeptide repeats (9 copies)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H1Q1.1

Gene LinkOut

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