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AHP2 Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837893, updated on 18-Sep-2024

Summary

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Official Symbol
AHP2
Official Full Name
Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP)
Primary source
TAIR:AT1G13330
Locus tag
AT1G13330
See related
Araport:AT1G13330
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Arabidopsis Hop2 homolog; HOMOLOGOUS-PAIRING PROTEIN 2; HOP2; T6J4.9; T6J4_9
Summary
Encodes the Arabidopsis Hop2 homologue. In other species, Hop2 is proposed to be involved in inter-homolog bias in double strand break repair.
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Genomic context

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See AHP2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Sequence:
Chromosome: 1; NC_003070.9 (4567935..4570598)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Endosomal targeting BRO1-like domain-containing protein Neighboring gene protein phosphatase 2A subunit A3 Neighboring gene Regulator of Vps4 activity in the MVB pathway protein Neighboring gene Protein kinase superfamily protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high throughput genetic screen identifies new early meiotic recombination functions in Arabidopsis thaliana. De Muyt A, et al. PLoS Genet, 2009 Sep. PMID 19763177, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_101204.3

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
acts_upstream_of_or_within chiasma assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP)
NP_172791.1
  • Arabidopsis Hop2 homolog (AHP2); CONTAINS InterPro DOMAIN/s: Tat binding protein 1-interacting (InterPro:IPR010776); Has 3022 Blast hits to 2708 proteins in 418 species: Archae - 82; Bacteria - 427; Metazoa - 1139; Fungi - 246; Plants - 98; Viruses - 21; Other Eukaryotes - 1009 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4567935..4570598
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101204.3 → NP_172791.1  Tat-binding protein 1(Tbp-1)-interacting protein (TBPIP) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172791.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FX64
    UniProtKB/TrEMBL
    A0A178WCC4, A0A5S9U893
    Conserved Domains (3) summary
    pfam07106
    Location:8 → 69
    TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
    pfam18517
    Location:149 → 206
    LZ3wCH; Leucine zipper with capping helix domain
    cl27170
    Location:62 → 201
    DUF460; Protein of unknown function (DUF460)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FX64.1

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