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hypothetical protein (DUF1262) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837908, updated on 18-Sep-2024

Summary

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Official Full Name
hypothetical protein (DUF1262)
Primary source
TAIR:AT1G13480
Locus tag
AT1G13480
See related
Araport:AT1G13480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6J4.21; T6J4_21
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (4622550..4624081, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2A regulatory B subunit family protein Neighboring gene hypothetical protein (DUF1262) Neighboring gene uncharacterized protein Neighboring gene hypothetical protein (DUF1262)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_101218.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
hypothetical protein (DUF1262)
NP_172805.1
  • Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13520.1); Has 111 Blast hits to 104 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    4622550..4624081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_101218.3 → NP_172805.1  hypothetical protein (DUF1262) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172805.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WGD1, A0A5S9U6V7, A0A654E9K5, Q56Y29
    Conserved Domains (2) summary
    pfam05431
    Location:215 → 381
    Toxin_10; Insecticidal Crystal Toxin, P42
    pfam06880
    Location:23 → 123
    DUF1262; Protein of unknown function (DUF1262)
Nucleotide Protein
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