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uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838279, updated on 18-Sep-2024

Summary

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Official Full Name
uncharacterized protein
Primary source
TAIR:AT1G17090
Locus tag
AT1G17090
See related
Araport:AT1G17090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F20D23.31; F20D23_31
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (5842168..5844367, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein Neighboring gene Ribosomal protein L18ae family Neighboring gene SOUL heme-binding family protein Neighboring gene ubiquitin-specific protease 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001160874.2
NM_001332277.1
NM_001332278.1
NM_001332279.1
NM_101569.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
uncharacterized protein
NP_001154346.1
  • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
NP_001319025.1
  • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5842168..5844367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001160874.2 → NP_001154346.1  uncharacterized protein AT1G17090 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154346.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIS9, A0A384LMH3, Q93Z61

  2. NM_001332277.1 → NP_001319025.1  uncharacterized protein AT1G17090 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIS9, A0A384LMH3, Q93Z61

  3. NM_001332278.1 → NP_001322670.1  uncharacterized protein AT1G17090 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIS9, A0A384LMH3, Q93Z61

  4. NM_101569.3 → NP_173152.1  uncharacterized protein AT1G17090 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173152.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIS9, A0A384LMH3, Q93Z61

  5. NM_001332279.1 → NP_001322671.1  uncharacterized protein AT1G17090 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIS9, A0A384LMH3, Q93Z61
Nucleotide Protein
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