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B-block binding subunit of TFIIIC [ Arabidopsis thaliana (thale cress) ]

Gene ID: 838317, updated on 18-Sep-2024

Summary

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Official Full Name
B-block binding subunit of TFIIIC
Primary source
TAIR:AT1G17450
Locus tag
AT1G17450
See related
Araport:AT1G17450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F28G4.7
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Genomic context

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Location:
chromosome: 1
Exon count:
18
Sequence:
Chromosome: 1; NC_003070.9 (5988280..5997033, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene lipoxygenase 3 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Transcription initiation factor TFIID subunit A Neighboring gene ELF4-like 4 Neighboring gene TRF-like 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_101606.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase III promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
part_of transcription factor TFIIIC complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
B-block binding subunit of TFIIIC
NP_001185022.1
  • B-block binding subunit of TFIIIC; FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309); BEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G59453.1).
NP_173188.5
  • B-block binding subunit of TFIIIC; CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309); BEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G59453.1); Has 94 Blast hits to 81 proteins in 18 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    5988280..5997033 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001198093.2 → NP_001185022.1  B-block binding subunit of TFIIIC [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001185022.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9UWQ9, A0A654EAQ6, F4I7J9
    Conserved Domains (2) summary
    cd16169
    Location:565 → 646
    Tau138_eWH; extended winged-helix domain of tau138 and related proteins
    pfam04182
    Location:105 → 189
    B-block_TFIIIC; B-block binding subunit of TFIIIC

  2. NM_001332305.1 → NP_001320338.1  B-block binding subunit of TFIIIC [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W182, A0A1P8AML5

  3. NM_101606.5 → NP_173188.5  B-block binding subunit of TFIIIC [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_173188.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W182, F4I7K0
    Conserved Domains (1) summary
    pfam04182
    Location:105 → 189
    B-block_TFIIIC; B-block binding subunit of TFIIIC
Nucleotide Protein
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